SMTL ID : 4d8c.1 (2 other biounits)

Crystal Structure of Human Beta Secretase in Complex with NVP-BXD552, derived from a co-crystallization experiment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

monomer

Ligands

1 x BXD: (3S,4S,5R)-3-(4-amino-3-{[(2R)-3-ethoxy-1,1,1-trifluoropropan-2-yl]oxy}-5-fluorobenzyl)-5-[(3-tert-butylbenzyl)amino]tetrahydro-2H-thiopyran-4-ol 1,1-dioxide(Non-covalent)

BXD.1: 26 residues within 4Å: Chain A: G.27, Q.28, G.29, L.46, D.48, G.50, S.51, V.85, P.86, Y.87, T.88, Q.89, G.90, K.123, F.124, I.126, W.131, I.134, I.142, R.144, Y.214, I.242, D.244, G.246, T.247, T.248 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.46, A:V.85, A:Y.87, A:Y.87, A:I.134, A:I.142, A:Y.214 Hydrogen bonds: A:D.48, A:K.123, A:D.244 Water bridges: A:T.248 pi-Stacking: A:Y.87 Halogen bonds: A:T.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rueeger, H. et al., Discovery of cyclic sulfone hydroxyethylamines as potent and selective beta-site APP-cleaving enzyme 1 (BACE1) inhibitors: structure based design and in vivo reduction of amyloid beta-peptides. J.Med.Chem. (2012)

Release Date

2012-11-21

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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