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SMTL ID : 3hkn.1

Human carbonic anhydrase II in complex with (2,3,4,6-Tetra-O-acetyl-beta-D-galactopyranosyl) -(1-4)-1,2,3,6-tetra-O-acetyl-1-thio-beta-D-glucopyranosylsulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x Z3K- Z3L: 2,3,4,6-tetra-O-acetyl-beta-D-galactopyranose-(1-4)-(1S)-2,3,6-tri-O-acetyl-1,5-anhydro-1-sulfamoyl-D-glucitol(Non-covalent)

Z3K-Z3L.1:

15 residues within 4Å:

Chain A: N.62, N.67, Q.92, H.94, H.96, H.119, V.121, F.130, L.140, L.197, T.198, T.199, P.201, L.203
Ligands: ZN.2

2 PLIP interactions:

2 interactions with chain A

Hydrophobic interactions: A:V.121, A:L.140, A:L.197, A:T.199, A:P.201, A:L.203
Hydrogen bonds: A:N.67, A:Q.92, A:H.94, A:T.198
Salt bridges: A:H.94, A:H.94, A:H.96

1 x ZN: ZINC ION(Non-covalent)

ZN.2:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: Z3K-Z3L.1

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:	5 residues within 4Å: Chain A: Y.7, P.13, D.242, W.244, P.246 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.7 Water bridges: A:Y.7, A:V.241
GOL.4:	6 residues within 4Å: Chain A: A.38, K.39, Y.40, A.257, F.259, K.260 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.40, A:K.260, A:K.260

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Lopez, M. et al., S-glycosyl primary sulfonamides--a new structural class for selective inhibition of cancer-associated carbonic anhydrases. J.Med.Chem. (2009)

Release Date

2009-10-13

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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