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SMTL ID : 3ieo.1

The coumarin-binding site in carbonic anhydrase: the antiepileptic lacosamide as an example

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

4 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198

4 PLIP interactions:

3 interactions with chain A, 1 Ligand-Water interactions

Metal complexes: A:H.94, A:H.96, A:H.119, H₂O.2

2 x HG: MERCURY (II) ION(Non-covalent)

HG.2:	5 residues within 4Å: Chain A: Q.136, P.137, E.204, C.205 Ligands: BEZ.5 No protein-ligand interaction detected (PLIP)
HG.3:	3 residues within 4Å: Chain A: N.62, G.63, H.64 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.62, A:H.64, H₂O.5

1 x AMJ: N~2~-acetyl-N-benzyl-O-methyl-L-serinamide(Non-covalent)

AMJ.4:

4 residues within 4Å:

Chain A: I.91, Q.92, V.121, F.130

5 PLIP interactions:

5 interactions with chain A

Hydrophobic interactions: A:I.91, A:V.121, A:F.130
Hydrogen bonds: A:Q.92
Water bridges: A:T.199

1 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.5:

5 residues within 4Å:

Chain A: Q.135, Q.136, P.137, E.204
Ligands: HG.2

1 PLIP interactions:

1 interactions with chain A

Hydrophobic interactions: A:P.137

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Temperini, C. et al., The coumarin-binding site in carbonic anhydrase accommodates structurally diverse inhibitors: the antiepileptic lacosamide as an example and lead molecule for novel classes of carbonic anhydrase inhibitors. J.Med.Chem. (2010)

Release Date

2010-01-26

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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1ca3.1 | 1cnw.1 | 1cnx.1 | 1cny.1 | 1eou.1 | 1g6v.1 | 1hca.1 | 1kwq.1 | 1kwr.1 | 1t9n.1 | 1tb0.1 | 1tbt.1 | 1te3.1 | 1teq.1 | 1teu.1 | 1xeg.1 | 1xev.1 | 1xev.2 | 1xev.3 | 1xev.4 | 2ax2.1 | 2eu2.1 | 2eu3.1 | 2ez7.1 | 2fmg.1 | 2fmz.1 | 2foq.1 | 2fos.1 | 2fou.1 | 2fov.1 more...less...

2geh.1 | 2h15.1 | 2hkk.1 | 2nng.1 | 2nno.1 | 2nns.1 | 2nnv.1 | 2o4z.1 | 2pou.1 | 2pow.1 | 2q1b.1 | 2q1q.1 | 2q38.1 | 2vva.1 | 2vvb.1 | 3b4f.1 | 3bl0.1 | 3bl1.1 | 3c7p.1 | 3caj.1 | 3cyu.1 | 3d8w.1 | 3d92.1 | 3d93.1 | 3d9z.1 | 3daz.1 | 3dd0.1 | 3dd8.1 | 3efi.1 | 3eft.1 | 3f4x.1 | 3f8e.1 | 3ffp.1 | 3hfp.1 | 3hkn.1 | 3hkq.1 | 3hkt.1 | 3hku.1 | 3hlj.1 | 3hs4.1 | 3igp.1 | 3k2f.1 | 3k34.1 | 3k7k.1 | 3kkx.1 | 3koi.1 | 3kok.1 | 3kon.1 | 3ks3.1 | 3kwa.1 | 3l14.1 | 3l14.2 | 3m1j.1 | 3m2n.1 | 3m3x.1 | 3m40.1 | 3m5e.1 | 3m67.1 | 3m96.1 | 3m98.1 | 3mhc.1 | 3mhi.1 | 3mhl.1 | 3mhm.1 | 3mho.1 | 3ml2.1 | 3mmf.1 | 3mna.1 | 3mwo.1 | 3mwo.2 | 3myq.1 | 3mzc.1 | 3n0n.1 | 3n2p.1 | 3n3j.1 | 3n4b.1 | 3nb5.1 | 3ni5.1 | 3nj9.1 | 3oim.1 | 3oku.1 | 3oy0.1 | 3oyq.1 | 3oys.1 | 3p3h.1 | 3p3j.1 | 3p44.1 | 3p4v.1 | 3p55.1 | 3p58.1 | 3p5a.1 | 3p5l.1 | 3qyk.1 | 3s8x.1 | 3s9t.1 | 3sap.1 | 3sax.1 | 3sbh.1 | 3sbi.1 | 3t82.1 | 3t83.1 | 3t84.1 | 3t85.1 | 3v2j.1 | 3v2m.1 | 3v5g.1 | 3zp9.1 | 4ca2.1 | 4cq0.1 | 4dz7.1 | 4dz9.1 | 4e3d.1 | 4e3f.1 | 4e3g.1 | 4e3h.1 | 4e49.1 | 4e4a.1 | 4e5q.1 | 4fpt.1 | 4frc.1 | 4fu5.1 | 4fvn.1 | 4fvo.1 | 4ht0.1 | 4ito.1 | 4kni.1 | 4knj.1 | 4lhi.1 | 4lp6.1 | 4lp6.2 | 4lp6.3 | 4mlt.1 | 4mlx.1 | 4mo8.1 | 4mty.1 | 4n0x.1 | 4n16.1 | 4pyx.1 | 4pyy.1 | 4pzh.1 | 4q49.1 | 4q6d.1 | 4q6e.1 | 4q7p.1 | 4q7s.1 | 4q7v.1 | 4q7w.1 | 4q81.1 | 4q83.1 | 4q87.1 | 4q8x.1 | 4q8y.1 | 4q8z.1 | 4q90.1 | 4q99.1 | 4q9y.1 | 4qiy.1 | 4qiy.2 | 4qiy.3 | 4qiy.4 | 4qjm.1 | 4qsa.1 | 4qsb.1 | 4qsi.1 | 4qtl.1 | 4r5b.1 | 4rfc.1 | 4rfd.1 | 4rh2.1 | 4rn4.1 | 4rux.1 | 4ruy.1 | 4ruz.1 | 4wl4.1 | 4ww6.1 | 4yx4.1 | 4yxi.1 | 4yxo.1 | 4yxu.1 | 4yyt.1 | 5a6h.1 | 5byi.1 | 5c8i.1 | 5dog.1 | 5doh.1 | 5doh.2 | 5drs.1 | 5dsk.1 | 5dsl.1 | 5dsm.1 | 5dso.1 | 5dsp.1 | 5dsq.1 | 5dsr.1 | 5eh5.1 | 5eh7.1 | 5eh8.1 | 5ehe.1 | 5ehv.1 | 5ehw.1 | 5fdc.1 | 5fdi.1 | 5flo.1 | 5flp.1 | 5flq.1 | 5flr.1 | 5fls.1 | 5flt.1 | 5fng.1 | 5fnh.1 | 5fni.1 | 5fnj.1 | 5fnk.1 | 5fnl.1 | 5fnm.1 | 5gmn.1 | 5l3o.1 | 5l6k.1 | 5l6t.1 | 5l70.1 | 5l9e.1 | 5l9e.2 | 5l9e.3 | 5l9e.4 | 5ll4.1 | 5ll4.2 | 5llc.1 | 5lle.1 | 5llg.1 | 5llh.1 | 5n1r.1 | 5n1s.1 | 5n24.1 | 5n25.1 | 5nea.1 | 5nee.1 | 5o07.1 | 5tfx.1 | 5thj.1 | 5thn.1 | 5txy.1 | 5ty1.1 | 5ty8.1 | 5ty9.1 | 5tya.1 | 5u0d.1 | 5u0e.1 | 5u0f.1 | 5u0g.1 | 5uln.1 | 5umc.1 | 5vgy.1 | 5wex.1 | 5y2r.1 | 5y2s.1 | 5yui.1 | 5yuj.1 | 5yuk.1 | 6bbs.1 | 6bc9.1 | 6bcc.1 | 6c7w.1 | 6c7x.1 | 6d1l.1 | 6d1m.1 | 6g3q.1 | 6g6t.1 | 6got.1 | 6h29.1 | 6h3q.1 | 6hd2.1 | 6hx5.1 | 6ic2.1 | 6km3.1 | 6km4.1 | 6km5.1 | 6km6.1 | 6luu.1 | 6luv.1 | 6luw.1 | 6lux.1 | 6luy.1 | 6luz.1 | 6lv1.1 | 6lv2.1 | 6lv3.1 | 6lv4.1 | 6lv5.1 | 6lv6.1 | 6lv7.1 | 6lv8.1 | 6lv9.1 | 6lva.1 | 6odz.1 | 6oe0.1 | 6oe1.1 | 6oto.1 | 6pdv.1 | 6pea.1 | 6pgx.1 | 6qeb.1 | 6r6f.1 | 6r6j.1 | 6rg3.1 | 6rg4.1 | 6rhj.1 | 6rhk.1 | 6sds.1 | 6sx9.1 | 6syb.1 | 6sys.1 | 6t4n.1 | 6t4o.1 | 6t4p.1 | 6t5c.1 | 6t81.1 | 6ufb.1 | 6ufc.1 | 6ufd.1 | 6ux1.1 | 6wka.1 | 6wq4.1 | 6wq5.1 | 6wq7.1 | 6wq8.1 | 6wq9.1 | 6xwz.1 | 6yma.1 | 6ymb.1 | 6ypw.1 | 6yqt.1 | 6yqu.1 | 6yzq.1 | 6yzr.1 | 6yzs.1 | 6yzt.1 | 6yzu.1 | 6yzv.1 | 6yzw.1 | 6yzx.1 | 7aeq.1 | 7aes.1 | 7agn.1 | 7agn.2 | 7agn.3 | 7agn.4 | 7asj.1 | 7bfa.1 | 7bg5.1 | 7bhh.1 | 7bi5.1 | 7jnr.1 | 7jnv.1 | 7jnw.1 | 7jnx.1 | 7jnz.1 | 7k6i.1 | 7k6j.1 | 7k6k.1 | 7k6l.1 | 7nh6.1 | 7nh8.1 | 7ok8.1 | 7orp.1 | 7orq.1 | 7oym.1 | 7oyn.1 | 7oyo.1 | 7oyp.1 | 7oyq.1 | 7oyr.1 | 7qbh.1 | 7qgx.1 | 7qgy.1 | 7qgz.1 | 7qnv.1 | 7qrk.1 | 7qse.1 | 7qsi.1 | 7qzx.1 | 7r1x.1 | 7rny.1 | 7rnz.1 | 7rre.1 | 7y2a.1 | 7y2c.1 | 7y2e.1 | 7y2f.1 | 7y2g.1 | 7y2h.1 | 7y2i.1 | 7y2j.1 | 7y2k.1 | 7y2l.1 | 7y2m.1 | 7y2n.1 | 7y2o.1 | 7y2q.1 | 7y2r.1 | 7y2s.1 | 7y2t.1 | 7y2u.1 | 7y2v.1 | 7y2w.1 | 7y2x.1 | 7ywt.1 | 7zl6.1 | 7zwb.1 | 8aa6.1 | 8aae.1 | 8bjx.1 | 8boe.1 | 8bzz.1 | 8c0r.1 | 8cr0.1 | 8dj9.1 | 8em3.1 | 8emu.1 | 8exc.1 | 8exg.1 | 8eyl.1 | 8fal.1 | 8fau.1 | 8fqx.1 | 8fqy.1 | 8fqz.1 | 8j2o.1 | 8ogf.1 | 8okq.1 | 8oli.1 | 8olk.1 | 8olm.1 | 8omb.1 | 8omh.1 | 8omn.1 | 8omp.1 | 8otp.1 | 8oub.1 | 8qf7.1 | 8qf9.1 | 8qfk.1 | 8qh8.1 | 8qho.1 | 8qkz.1 | 8qqa.1 | 8r2f.1 | 8r2k.1 | 8rj2.1 | 8saf.1 | 8sag.1 | 8sd1.1 | 8sd6.1 | 8sd7.1 | 8sd8.1 | 8sd9.1 | 8sf1.1 | 8wep.1 | 9gfv.1 | 9gfw.1 | 9gfx.1

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