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SMTL ID : 3m1j.1

The crystal structure of a NAMI A-Carbonic Anhydrase II adduct discloses the mode of action of this novel anticancer metallodrug

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: IMD.5

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x RU: RUTHENIUM ION(Non-covalent)

RU.2:

5 residues within 4Å:

Chain A: W.5, N.62, G.63, H.64, K.169

3 PLIP interactions:

1 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:H.64, H₂O.1, H₂O.1

1 x MBO: MERCURIBENZOIC ACID(Non-covalent)

MBO.3:

6 residues within 4Å:

Chain A: V.134, Q.135, Q.136, P.137, E.204, C.205

3 PLIP interactions:

3 interactions with chain A

Hydrophobic interactions: A:P.137
Metal complexes: A:Q.136, A:C.205

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:

5 residues within 4Å:

Chain A: Q.92, H.94, L.197, T.199
Ligands: IMD.5

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:Q.92

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.5:

11 residues within 4Å:

Chain A: H.94, H.96, H.119, V.121, V.142, S.196, L.197, T.198, W.208
Ligands: ZN.1, DMS.4

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:T.198
pi-Stacking: A:H.119

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Casini, A. et al., The x-ray structure of the adduct between NAMI-A and carbonic anhydrase provides insights into the reactivity of this metallodrug with proteins. Chemmedchem (2010)

Release Date

2011-01-19

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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