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SMTL ID : 3m98.1

Crystal structure of human carbonic anhydrase isozyme II with 5-(1H-benzimidazol-1-ylacetyl)-2-chlorobenzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: E02.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x E02: 5-(1H-benzimidazol-1-ylacetyl)-2-chlorobenzenesulfonamide(Non-covalent)

E02.2:

17 residues within 4Å:

Chain A: W.5, N.62, H.64, N.67, Q.92, H.94, H.96, H.119, V.121, L.140, V.142, L.197, T.198, T.199, P.200, W.208
Ligands: ZN.1

7 PLIP interactions:

7 interactions with chain A

Hydrophobic interactions: A:W.5, A:L.197
Hydrogen bonds: A:N.62, A:T.198, A:T.198, A:T.199
Water bridges: A:N.67

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3:

8 residues within 4Å:

Chain A: V.160, D.161, V.162, L.163, D.164, K.224, K.227, L.228

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:D.164, A:D.164
Salt bridges: A:K.224

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:

5 residues within 4Å:

Chain A: Y.7, P.13, D.242, W.244, P.246

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Capkauskaite, E. et al., Crystal structure of human carbonic anhydrase isozyme II with 5-(1H-benzimidazol-1-ylacetyl)-2-chlorobenzenesulfonamide. To be published

Release Date

2011-03-02

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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