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SMTL ID : 3mhi.1

Crystal structure of human carbonic anhydrase isozyme II with 4-{[(5-nitro-6-oxo-1,6-dihydro-4-pyrimidinyl)amino]methyl}benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: J90.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

2 x J90: 4-{[(5-nitro-6-oxo-1,6-dihydropyrimidin-4-yl)amino]methyl}benzenesulfonamide(Non-covalent)

J90.2:	15 residues within 4Å: Chain A: Q.92, H.94, H.96, H.119, V.121, F.130, V.134, V.142, L.197, T.198, T.199, P.201, W.208 Ligands: ZN.1, DMS.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.121, A:V.121, A:L.197, A:L.197 Hydrogen bonds: A:T.198, A:T.198 Water bridges: A:T.199
J90.3:	9 residues within 4Å: Chain A: H.4, W.5, H.10, N.11, H.15, W.16, K.18, D.19, F.20 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:N.11, A:H.15 Hydrogen bonds: A:D.19, A:D.19, A:D.19

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:	4 residues within 4Å: Chain A: Y.7, D.242, W.244, P.246 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:D.242 pi-Cation interactions: A:W.244, A:W.244
DMS.5:	4 residues within 4Å: Chain A: I.91, Q.92, F.130 Ligands: J90.2 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:F.130

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Sudzius, J. et al., 4-[N-(Substituted 4-pyrimidinyl)amino]benzenesulfonamides as inhibitors of carbonic anhydrase isozymes I, II, VII, and XIII. Bioorg.Med.Chem. (2010)

Release Date

2010-10-20

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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