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SMTL ID : 3mho.1

Crystal structure of human carbonic anhydrase isozyme II with 4-[N-(6-chloro-5-formyl-2-methylthiopyrimidin-4-yl)amino]benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

7 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: J43.4, UNL.6

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:	5 residues within 4Å: Chain A: Y.7, P.13, D.242, W.244, P.246 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:D.242 pi-Cation interactions: A:W.244, A:W.244
DMS.3:	5 residues within 4Å: Chain A: N.67, I.91, Q.92, F.130 Ligands: J43.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.67, A:Q.92

1 x J43: 4-{[6-chloro-5-formyl-2-(methylsulfanyl)pyrimidin-4-yl]amino}benzenesulfonamide(Non-covalent)

J43.4:

18 residues within 4Å:

Chain A: W.5, N.62, H.94, H.96, H.119, V.121, F.130, V.134, V.142, L.197, T.198, T.199, P.200, P.201, W.208
Ligands: ZN.1, DMS.3, UNL.6

7 PLIP interactions:

7 interactions with chain A

Hydrophobic interactions: A:V.121, A:L.197, A:L.197
Hydrogen bonds: A:T.198, A:T.198, A:T.199
Water bridges: A:Q.92

2 x UNL: UNKNOWN LIGAND

UNL.5:	1 residues within 4Å: Chain A: D.129 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.129, A:D.129, A:F.130
UNL.6:	12 residues within 4Å: Chain A: Y.7, N.62, H.64, A.65, N.67, Q.92, H.94, H.96, T.199, N.243 Ligands: ZN.1, J43.4 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.7, A:Y.7, A:Q.92, A:H.94, A:T.199, A:N.243 Water bridges: A:N.62

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Sudzius, J. et al., 4-[N-(Substituted 4-pyrimidinyl)amino]benzenesulfonamides as inhibitors of carbonic anhydrase isozymes I, II, VII, and XIII. Bioorg.Med.Chem. (2010)

Release Date

2010-10-20

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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