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SMTL ID : 3n2p.1

Crystal structure of human carbonic anhydrase II in complex with a benzenesulfonamide inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

7 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: AYX.2, GOL.4

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x AYX: 4-{[(3-nitrophenyl)carbamoyl]amino}benzenesulfonamide(Non-covalent)

AYX.2:

20 residues within 4Å:

Chain A: N.67, E.69, I.91, Q.92, H.94, H.96, E.106, H.119, V.121, F.130, L.140, V.142, S.196, L.197, T.198, T.199, W.208
Ligands: ZN.1, DMS.3, GOL.4

7 PLIP interactions:

7 interactions with chain A

Hydrophobic interactions: A:V.121, A:V.121, A:F.130, A:L.197
Hydrogen bonds: A:Q.92, A:T.198, A:T.198

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:

6 residues within 4Å:

Chain A: L.60, N.62, N.67, E.69
Ligands: AYX.2, GOL.4

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:N.67, A:E.69
Salt bridges: A:E.69

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4:

13 residues within 4Å:

Chain A: W.5, Y.7, N.62, H.64, A.65, N.67, Q.92, H.94, H.96, T.199
Ligands: ZN.1, AYX.2, DMS.3

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:N.67, A:Q.92
Water bridges: A:H.64

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Pacchiano, F. et al., Selective hydrophobic pocket binding observed within the carbonic anhydrase II active site accommodate different 4-substituted-ureido-benzenesulfonamides and correlate to inhibitor potency. Chem.Commun.(Camb.) (2010)

Release Date

2011-03-09

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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