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SMTL ID : 3nj9.1

Crystal structure of carbonic anhydrase II in complex with a Nir inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: TE2.3

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x HG: MERCURY (II) ION(Non-covalent)

HG.2:

4 residues within 4Å:

Chain A: Q.136, P.137, E.204, C.205

2 PLIP interactions:

1 interactions with chain A, 1 Ligand-Water interactions

Metal complexes: A:Q.136, H₂O.5

1 x TE2: 3-(4-sulfamoylphenyl)-N-[6-({(6Z)-2-[(2Z)-2-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)ethyl]-6-[(2E)-2-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)ethylidene]cyclohex-1-en-1-yl}amino)hexyl]propanamide(Non-covalent)

TE2.3:

18 residues within 4Å:

Chain A: F.20, I.22, Q.92, H.94, H.96, H.119, V.121, F.130, V.134, V.142, L.197, T.198, T.199, P.200, P.201, L.203, W.208
Ligands: ZN.1

12 PLIP interactions:

12 interactions with chain A

Hydrophobic interactions: A:F.20, A:F.20, A:I.22, A:V.121, A:F.130, A:L.197, A:L.197, A:L.203, A:L.203
Hydrogen bonds: A:T.198, A:T.198
Water bridges: A:T.199

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Temperini, C. et al., Crystal structure of carbonic anhydrase II in complex with a Nir inhibitor. To be Published

Release Date

2011-06-22

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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