SMTL ID : 3rwj.1

Rhesus macaque MHC class I molecule Mamu-B*17-HW8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x HIS- LEU- GLU- VAL- GLN- GLY- TYR- TRP: Vif HW8 peptide from Virion infectivity factor(Non-covalent)

HIS-LEU-GLU-VAL-GLN-GLY-TYR-TRP.1: 27 residues within 4Å: Chain A: Y.7, Y.9, S.24, E.45, A.63, R.65, R.66, E.69, A.70, T.73, E.76, N.77, T.80, A.81, Y.84, I.95, Y.99, S.116, Y.118, Y.123, T.143, K.146, W.147, Y.152, R.155, F.156, Y.159 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:R.66, A:T.73, A:N.77, A:A.81, A:I.95, A:I.95, A:Y.99, A:Y.118, A:Y.118, A:Y.123, A:Y.152, A:F.156, A:Y.159 Hydrogen bonds: A:Y.7, A:Y.9, A:Y.9, A:S.24, A:N.77, A:N.77, A:Y.99, A:Y.99, A:S.116, A:T.143, A:Y.152, A:Y.159 Water bridges: A:E.45, A:Q.72, A:T.73, A:W.147, A:N.150, A:Y.152 Salt bridges: A:R.65, A:R.66, A:K.146 pi-Stacking: A:Y.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Structural basis of diverse peptide accommodation by the rhesus macaque MHC class I molecule Mamu-B*17: insights into immune protection from simian immunodeficiency virus. J.Immunol. (2011)

Release Date

2012-03-21

Peptides

Major histocompatibility complex class I: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Major histocompatibility complex class I

Beta-2-microglobulin

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