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SMTL ID : 3s9t.1

Crystal structure of human carbonic anhydrase isozyme II with 2-chloro-5-{[(4,6-dimethyl-2-pyrimidinyl)sulfanyl]acetyl}benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: E49.5

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:	3 residues within 4Å: Chain A: Q.92, F.130 Ligands: E49.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.92
DMS.3:	4 residues within 4Å: Chain A: Y.7, D.242, W.244, P.246 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:D.242 pi-Cation interactions: A:W.244, A:W.244

1 x BCN: BICINE(Non-covalent)

BCN.4:

4 residues within 4Å:

Chain A: K.148, K.212, E.213, P.214

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:K.148, A:K.148
Water bridges: A:Y.114
Salt bridges: A:K.212

1 x E49: 2-chloro-5-{[(4,6-dimethylpyrimidin-2-yl)sulfanyl]acetyl}benzenesulfonamide(Non-covalent)

E49.5:

16 residues within 4Å:

Chain A: N.62, N.67, Q.92, H.94, H.96, H.119, V.121, F.130, L.140, V.142, L.197, T.198, T.199, W.208
Ligands: ZN.1, DMS.2

7 PLIP interactions:

7 interactions with chain A

Hydrophobic interactions: A:V.121, A:F.130
Hydrogen bonds: A:N.67, A:Q.92, A:T.198, A:T.198
Water bridges: A:N.62

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Capkauskaite, E. et al., Design of [(2-pyrimidinylthio)acetyl]benzenesulfonamides as inhibitors of human carbonic anhydrases. Eur.J.Med.Chem. (2012)

Release Date

2012-04-18

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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