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SMTL ID : 4e3g.1

Nucleophile recognition as an alternative inhibition mode for benzoic acid based carbonic anhydrase inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: PHB.3

4 PLIP interactions:

3 interactions with chain A, 1 Ligand-Water interactions

Metal complexes: A:H.94, A:H.96, A:H.119, H₂O.1

1 x MBO: MERCURIBENZOIC ACID(Non-covalent)

MBO.2:

6 residues within 4Å:

Chain A: V.134, Q.135, Q.136, P.137, E.204, C.205

3 PLIP interactions:

3 interactions with chain A

Hydrophobic interactions: A:P.137
Metal complexes: A:Q.136, A:C.205

1 x PHB: P-HYDROXYBENZOIC ACID(Non-covalent)

PHB.3:

8 residues within 4Å:

Chain A: Q.92, H.94, F.130, L.197, T.198, T.199
Ligands: ZN.1, GOL.4

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:F.130, A:L.197, A:L.197
Hydrogen bonds: A:T.198, A:T.199, A:T.199
Water bridges: A:Q.92
Salt bridges: A:H.94

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: PHB.3

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:N.67, A:Q.92

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5:

3 residues within 4Å:

Chain A: S.187, L.188, D.189

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:L.188

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Martin, D.P. et al., Nucleophile recognition as an alternative inhibition mode for benzoic acid based carbonic anhydrase inhibitors. Chem.Commun.(Camb.) (2012)

Release Date

2012-06-27

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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