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SMTL ID : 4e49.1

Nucleophile recognition as an alternative inhibition mode for benzoic acid based carbonic anhydrase inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: RCO.3

4 PLIP interactions:

3 interactions with chain A, 1 Ligand-Water interactions

Metal complexes: A:H.94, A:H.96, A:H.119, H₂O.1

1 x MBO: MERCURIBENZOIC ACID(Non-covalent)

MBO.2:

6 residues within 4Å:

Chain A: V.134, Q.135, Q.136, P.137, E.204, C.205

2 PLIP interactions:

2 interactions with chain A

Metal complexes: A:V.134, A:C.205

4 x RCO: RESORCINOL(Non-covalent)

RCO.3:	10 residues within 4Å: Chain A: Q.92, V.121, L.140, V.142, L.197, T.198, V.206, W.208 Ligands: ZN.1, RCO.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.121, A:L.140, A:V.142, A:L.197, A:V.206 Hydrogen bonds: A:Q.92, A:T.198, A:T.198
RCO.4:	8 residues within 4Å: Chain A: N.67, E.69, I.91, Q.92, F.130 Ligands: RCO.3, RCO.5, SO4.7 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.91, A:Q.92 Hydrogen bonds: A:N.67, A:E.69, A:Q.92 Water bridges: A:R.58, A:N.62
RCO.5:	5 residues within 4Å: Chain A: E.69, F.70, D.72, I.91 Ligands: RCO.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.91 Hydrogen bonds: A:F.70, A:F.70, A:D.72 Water bridges: A:F.130
RCO.6:	2 residues within 4Å: Chain A: D.34, T.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.34

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.7:

5 residues within 4Å:

Chain A: N.62, H.64, N.67, Q.92
Ligands: RCO.4

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:Q.92
Water bridges: A:H.64
Salt bridges: A:H.64

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Martin, D.P. et al., Nucleophile recognition as an alternative inhibition mode for benzoic acid based carbonic anhydrase inhibitors. Chem.Commun.(Camb.) (2012)

Release Date

2012-06-27

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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