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SMTL ID : 4kni.1

Crystal structure of human carbonic anhydrase isozyme II with 2-Chloro-4-{[(4,6-dimethylpyrimidin-2-yl)sulfanyl]acetyl}benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: E1E.5

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:	5 residues within 4Å: Chain A: Y.7, P.13, D.242, W.244, P.246 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:D.242 pi-Cation interactions: A:W.244, A:W.244
DMS.4:	6 residues within 4Å: Chain A: G.6, Y.7, G.8, N.11, F.230, E.238 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.11 Salt bridges: A:E.238 pi-Cation interactions: A:F.230

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3:

6 residues within 4Å:

Chain A: L.163, D.164, K.167, K.224, K.227, L.228

2 PLIP interactions:

2 interactions with chain A

Hydrophobic interactions: A:K.224
Water bridges: A:D.164

1 x E1E: 2-chloro-4-{[(4,6-dimethylpyrimidin-2-yl)sulfanyl]acetyl}benzenesulfonamide(Non-covalent)

E1E.5:

15 residues within 4Å:

Chain A: I.91, Q.92, H.94, H.96, H.119, V.121, F.130, L.140, V.142, S.196, L.197, T.198, T.199, W.208
Ligands: ZN.1

9 PLIP interactions:

9 interactions with chain A

Hydrophobic interactions: A:I.91, A:Q.92, A:V.121, A:F.130, A:L.197
Hydrogen bonds: A:T.198, A:T.198
Water bridges: A:Q.92
pi-Stacking: A:F.130

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Capkauskaite, E. et al., Benzenesulfonamides with pyrimidine moiety as inhibitors of human carbonic anhydrases I, II, VI, VII, XII, and XIII. Bioorg.Med.Chem. (2013)

Release Date

2013-11-06

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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