SMTL ID : 4o74.1 (1 other biounit)

Crystal structure of the first bromodomain of human BRD4 in complex with BI 2536

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x R78: 4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide(Non-covalent)

R78.1: 12 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, K.50, L.51, L.53, Y.56, C.95, Y.98, N.99, I.105 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.46, A:L.51, A:L.53, A:Y.56, A:Y.98, A:I.105 Hydrogen bonds: A:N.99 Water bridges: A:Q.44, A:Q.44

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, T.90, N.94, I.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62 EDO.3: 4 residues within 4Å: Chain A: F.38, D.104, L.107, M.108 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ember, S.W. et al., Acetyl-lysine Binding Site of Bromodomain-Containing Protein 4 (BRD4) Interacts with Diverse Kinase Inhibitors. Acs Chem.Biol. (2014)

Release Date

2014-03-05

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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