SMTL ID : 5f5z.1

Crystal structure of the first bromodomain of human BRD4 in complex with MA2-014

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x 5VY: 2-methyl-~{N}-[3-[[5-methyl-2-[[4-(4-methylpiperazin-1-yl)phenyl]amino]pyrimidin-4-yl]amino]phenyl]propane-2-sulfonamide(Non-covalent)

5VY.1: 18 residues within 4Å: Chain A: W.40, P.41, F.42, Q.43, Q.44, P.45, V.46, D.47, K.50, L.51, N.52, L.53, Y.56, C.95, Y.98, N.99, I.105 Ligands: EDO.3 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.40, A:P.41, A:F.42, A:Q.44, A:V.46, A:L.51, A:L.51, A:L.53, A:L.53, A:I.105 Hydrogen bonds: A:P.41, A:D.47, A:K.50, A:N.99, A:N.99

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, T.90, N.94, I.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94 EDO.3: 5 residues within 4Å: Chain A: N.99, D.103, D.104, I.105 Ligands: 5VY.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.104, A:I.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ember, S.W. et al., Potent Dual BET Bromodomain-Kinase Inhibitors as Value-Added Multitargeted Chemical Probes and Cancer Therapeutics. Mol. Cancer Ther. (2017)

Release Date

2017-04-05

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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