SMTL ID : 8fvk.2 (1 other biounit)

First bromodomain of BRD4 liganded with CCS-1477

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x JHL: (6S)-1-[3,4-bis(fluoranyl)phenyl]-6-[5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-(4-methoxycyclohexyl)benzimidazol-2-yl]piperidin-2-one(Non-covalent)

JHL.1: 14 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, V.46, K.50, L.51, L.53, Y.56, C.95, Y.98, N.99, I.105, M.108 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.41, A:F.42, A:L.51, A:L.51, A:L.53 Hydrogen bonds: A:W.40, A:N.99

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, P.63, T.90, N.94, I.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94 EDO.3: 6 residues within 4Å: Chain A: L.26, L.30, K.31, W.34, K.35, K.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.31 Water bridges: A:L.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schonbrunn, E. et al., Group 3 medulloblastoma transcriptional networks are sensitive to EP300/CBP bromodomain inhibition. To Be Published

Release Date

2024-02-07

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bromodomain-containing protein 4

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