SMTL ID : 6fsy.1

Crystal Structure of the first bromodomain of human BRD4 in complex with a 3,5-dimethylisoxazol ligand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94 EDO.2: 2 residues within 4Å: Chain A: Q.44, K.50 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.50

1 x E5Q: 3-(3,5-dimethyl-1,2-oxazol-4-yl)-5-[(~{R})-oxidanyl(pyridin-3-yl)methyl]phenol(Non-covalent)

E5Q.3: 11 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, V.46, L.51, L.53, Y.56, N.99, I.105, M.108 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.40, A:W.40, A:P.41, A:P.41, A:F.42, A:L.53, A:I.105, A:I.105 Hydrogen bonds: A:P.41, A:Q.44, A:N.99, A:I.105 Water bridges: A:D.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jennings, L.E. et al., BET bromodomain ligands: Probing the WPF shelf to improve BRD4 bromodomain affinity and metabolic stability. Bioorg.Med.Chem. (2018)

Release Date

2018-04-18

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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