SMTL ID : 5luu.1

Structure of the first bromodomain of BRD4 with a pyrazolo[4,3-c]pyridin fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94 Water bridges: A:T.62, A:T.62 EDO.2: 3 residues within 4Å: Chain A: Q.118, K.119, E.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.118, A:K.119

1 x 77X: 1-(3-phenyl-1,4,6,7-tetrahydropyrazolo[4,3-c]pyridin-5-yl)propan-1-one(Non-covalent)

77X.3: 10 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, Y.56, Y.98, N.99, I.105 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.40, A:P.41, A:F.42, A:V.46, A:L.51, A:L.53, A:Y.98, A:I.105 Hydrogen bonds: A:N.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Navratilova, I. et al., Discovery of New Bromodomain Scaffolds by Biosensor Fragment Screening. ACS Med Chem Lett (2016)

Release Date

2016-10-12

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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