SMTL ID : 5f61.1 (1 other biounit)

Crystal structure of the first bromodomain of human BRD4 in complex with MA4-022-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: N.99, D.103, D.104, I.105 Ligands: 5W0.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.104, A:I.105 EDO.2: 8 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, P.63, T.90, N.94, I.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94

1 x 5W0: ~{N}-[3-[[2-[[3-fluoranyl-4-(4-methylpiperazin-1-yl)phenyl]amino]-5-methyl-pyrimidin-4-yl]amino]phenyl]-2-methyl-propane-2-sulfonamide(Non-covalent)

5W0.3: 17 residues within 4Å: Chain A: W.40, P.41, F.42, Q.43, Q.44, P.45, V.46, D.47, K.50, L.51, L.53, Y.56, C.95, Y.98, N.99, I.105 Ligands: EDO.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:P.41, A:F.42, A:Q.44, A:V.46, A:L.51, A:L.51, A:L.53, A:I.105 Hydrogen bonds: A:P.41, A:D.47, A:K.50, A:N.99, A:N.99 Water bridges: A:D.47 pi-Stacking: A:W.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ember, S.W. et al., Potent Dual BET Bromodomain-Kinase Inhibitors as Value-Added Multitargeted Chemical Probes and Cancer Therapeutics. Mol. Cancer Ther. (2017)

Release Date

2017-02-08

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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