SMTL ID : 5e0r.1

Crystal Structure of the first bromodomain of BRD4 in complex with AYC

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

5 x 5J5: 2-[(chloroacetyl)amino]-5-[(E)-(4-sulfophenyl)diazenyl]benzenesulfonic acid(Non-covalent)

5J5.1: 9 residues within 4Å: Chain A: Q.21, N.80, A.81, Q.82, I.85, L.117, I.120, L.123, E.126 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.81, A:I.85, A:I.120, A:L.123 Hydrogen bonds: A:Q.21, A:A.81, A:Q.82 5J5.2: 11 residues within 4Å: Chain A: W.40, P.41, Q.44, P.45, V.46, D.47, K.50, L.51, D.104, I.105 Ligands: DMS.6 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.40, A:W.40, A:L.51, A:L.51, A:I.105, A:I.105 Hydrogen bonds: A:Q.44, A:P.45, A:D.47, A:D.104, A:I.105 5J5.3: 7 residues within 4Å: Chain A: Y.96, P.101, G.102, V.106, L.107, E.110 Ligands: 5J5.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.102, A:E.110 5J5.4: 4 residues within 4Å: Chain A: P.7, E.8, N.11, P.12 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.8 Hydrogen bonds: A:E.8, A:R.72 5J5.5: 4 residues within 4Å: Chain A: K.100, P.101, G.102 Ligands: 5J5.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.100, A:P.101 Hydrogen bonds: A:K.100

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 5 residues within 4Å: Chain A: V.46, Y.56, N.99, I.105 Ligands: 5J5.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, J. et al., Crystal Structure of the first bromodomain of BRD4 in complex with AYC. To Be Published

Release Date

2016-10-12

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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