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SMTL ID : 4pyx.1

Crystal structure of human carbonic anhydrase isozyme II with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: V90.4

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:

5 residues within 4Å:

Chain A: Y.7, P.13, D.242, W.244, P.246

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3:

6 residues within 4Å:

Chain A: L.163, D.164, K.167, K.224, K.227, L.228

No protein-ligand interaction detected (PLIP)

1 x V90: 2-(cyclooctylamino)-3,5,6-trifluoro-4-[(2-hydroxyethyl)sulfanyl]benzenesulfonamide(Non-covalent)

V90.4:

19 residues within 4Å:

Chain A: Y.7, N.62, H.64, A.65, N.67, Q.92, H.94, H.96, E.106, H.119, V.121, F.130, L.140, V.142, L.197, T.198, T.199, W.208
Ligands: ZN.1

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:H.64, A:A.65, A:T.199
Hydrogen bonds: A:Q.92, A:T.198, A:T.198

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Dudutiene, V. et al., Discovery and characterization of novel selective inhibitors of carbonic anhydrase IX. J.Med.Chem. (2014)

Release Date

2015-01-28

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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1ca3.1 | 1cnw.1 | 1cnx.1 | 1cny.1 | 1eou.1 | 1g6v.1 | 1hca.1 | 1kwq.1 | 1kwr.1 | 1t9n.1 | 1tb0.1 | 1tbt.1 | 1te3.1 | 1teq.1 | 1teu.1 | 1xeg.1 | 1xev.1 | 1xev.2 | 1xev.3 | 1xev.4 | 2ax2.1 | 2eu2.1 | 2eu3.1 | 2ez7.1 | 2fmg.1 | 2fmz.1 | 2foq.1 | 2fos.1 | 2fou.1 | 2fov.1 more...less...

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