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SMTL ID : 4q6e.1

Crystal structure of human carbonic anhydrase isozyme II with 4-{[3-(3,5-Dimethyl-1H-pyrazol-1-yl)-3-oxopropyl]amino}benzene-1-sulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: KR5.5

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x BCN: BICINE(Non-covalent)

BCN.2:

4 residues within 4Å:

Chain A: K.148, K.212, E.213, P.214

3 PLIP interactions:

3 interactions with chain A

Water bridges: A:Y.114, A:K.148
Salt bridges: A:K.148

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:	4 residues within 4Å: Chain A: I.91, Q.92, F.130 Ligands: KR5.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.92 Water bridges: A:N.67
DMS.4:	4 residues within 4Å: Chain A: Y.7, D.242, W.244, P.246 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:D.242 pi-Cation interactions: A:W.244, A:W.244

1 x KR5: 4-{[3-(3,5-dimethyl-1H-pyrazol-1-yl)-3-oxopropyl]amino}benzenesulfonamide(Non-covalent)

KR5.5:

16 residues within 4Å:

Chain A: Q.92, H.94, H.96, H.119, V.121, F.130, V.134, V.142, L.197, T.198, T.199, P.201, L.203, W.208
Ligands: ZN.1, DMS.3

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:V.121, A:V.134, A:L.197, A:L.197, A:P.201, A:L.203
Hydrogen bonds: A:T.198, A:T.198

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Rutkauskas, K. et al., 4-Amino-substituted Benzenesulfonamides as Inhibitors of Human Carbonic Anhydrases. Molecules (2014)

Release Date

2014-11-26

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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