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SMTL ID : 4q99.1

Crystal structure of 2-mercapto-4-methylphenol bound to human carbonic anhydrase II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: HT4.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x HT4: 4-methyl-2-sulfanylphenol(Non-covalent)

HT4.2:

12 residues within 4Å:

Chain A: Q.92, H.94, H.96, H.119, V.121, V.142, L.197, T.198, T.199, W.208
Ligands: ZN.1, GOL.4

5 PLIP interactions:

5 interactions with chain A

Hydrophobic interactions: A:V.121, A:V.121, A:V.142, A:L.197, A:L.197

1 x MBO: MERCURIBENZOIC ACID(Non-covalent)

MBO.3:

6 residues within 4Å:

Chain A: V.134, Q.135, Q.136, P.137, E.204, C.205

2 PLIP interactions:

2 interactions with chain A

Metal complexes: A:V.134, A:C.205

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: HT4.2

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:N.67, A:Q.92

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5:

4 residues within 4Å:

Chain A: Y.7, D.242, W.244, P.246

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Martin, D.P. et al., Exploring the influence of the protein environment on metal-binding pharmacophores. J.Med.Chem. (2014)

Release Date

2015-03-11

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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