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SMTL ID : 4qsa.1

Crystal structure of human carbonic anhydrase isozyme II with 2-chloro-4-{[(4-methyl-6-oxo-1,6-dihydropyrimidin-2-yl)thio]acetyl}benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: EWW.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x EWW: 2-chloro-4-{[(4-methyl-6-oxo-1,6-dihydropyrimidin-2-yl)sulfanyl]acetyl}benzenesulfonamide(Non-covalent)

EWW.2:

16 residues within 4Å:

Chain A: H.94, H.96, H.119, V.121, F.130, V.134, L.140, V.142, S.196, L.197, T.198, T.199, P.201, L.203, W.208
Ligands: ZN.1

9 PLIP interactions:

9 interactions with chain A

Hydrophobic interactions: A:V.134, A:L.197, A:L.197, A:P.201, A:L.203
Hydrogen bonds: A:T.198, A:T.198
Water bridges: A:Q.92
pi-Stacking: A:F.130

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3:

4 residues within 4Å:

Chain A: L.163, D.164, K.224, K.227

1 PLIP interactions:

1 interactions with chain A

Hydrophobic interactions: A:K.224

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:

5 residues within 4Å:

Chain A: Y.7, P.13, D.242, W.244, P.246

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5:

3 residues within 4Å:

Chain A: A.247, Q.248, P.249

4 PLIP interactions:

4 interactions with chain A

Water bridges: A:D.32, A:K.111, A:K.111, A:K.111

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kisonaite, M. et al., Intrinsic Thermodynamics and Structure Correlation of Benzenesulfonamides with a Pyrimidine Moiety Binding to Carbonic Anhydrases I, II, VII, XII, and XIII. Plos One (2014)

Release Date

2015-01-21

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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