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SMTL ID : 4qsi.1

Crystal structure of human carbonic anhydrase isozyme II with 5-{[(4-tert-buthyl-6-oxo-1,6-dihydropyrimidin-2-yl)thio]acetyl}-2-chlorobenzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: EWZ.5

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2:

7 residues within 4Å:

Chain A: V.160, D.161, L.163, D.164, K.224, K.227, L.228

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:D.161, A:D.164
Salt bridges: A:K.224

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:

5 residues within 4Å:

Chain A: Y.7, P.13, D.242, W.244, P.246

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

1 x NA: SODIUM ION(Non-functional Binders)

NA.4:

2 residues within 4Å:

Chain A: S.219, E.220

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:S.219, A:S.219
Water bridges: A:S.219

1 x EWZ: 5-{[(4-tert-butyl-6-oxo-1,6-dihydropyrimidin-2-yl)sulfanyl]acetyl}-2-chlorobenzenesulfonamide(Non-covalent)

EWZ.5:

18 residues within 4Å:

Chain A: W.5, N.62, H.64, N.67, Q.92, H.94, H.96, H.119, V.121, L.140, V.142, L.197, T.198, T.199, P.200, P.201, W.208
Ligands: ZN.1

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:V.121
Hydrogen bonds: A:N.62, A:N.67, A:Q.92, A:T.198, A:T.198

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kisonaite, M. et al., Intrinsic Thermodynamics and Structure Correlation of Benzenesulfonamides with a Pyrimidine Moiety Binding to Carbonic Anhydrases I, II, VII, XII, and XIII. Plos One (2014)

Release Date

2015-01-21

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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