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SMTL ID : 4wu9.1

Structure of cisPtNAP-NCP145

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1:	7 residues within 4Å: Chain C: G.44, A.45, G.46, A.47 Chain D: T.90, S.91 Chain J: A.110 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:A.45, C:G.46, C:A.47, D:S.91
SO4.3:	7 residues within 4Å: Chain G: G.44, A.45, G.46, A.47 Chain H: T.90, S.91 Chain I: A.110 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain H Hydrogen bonds: G:A.45, G:G.46, H:S.91, H:S.91

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2:

1 residues within 4Å:

Chain E: D.77

4 PLIP interactions:

1 interactions with chain E, 3 Ligand-Water interactions

Metal complexes: E:D.77, H₂O.1, H₂O.1, H₂O.1

3 x CX8: [2-{3-[(2-{[2-(amino-kappaN)ethyl]amino-kappaN}ethyl)amino-kappaN]propyl}-1H-benzo[de]isoquinoline-1,3(2H)-dionato(3-)]platinum(Non-functional Binders)

CX8.4:	4 residues within 4Å: Chain I: G.58, G.59 Chain J: C.87, C.88 0 PLIP interactions:
CX8.5:	2 residues within 4Å: Chain I: A.1 Chain J: T.145 0 PLIP interactions:
CX8.6:	4 residues within 4Å: Chain I: C.87, C.88 Chain J: G.58, G.59 0 PLIP interactions:

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Chua, E.Y. et al., Stereochemical control of nucleosome targeting by platinum-intercalator antitumor agents. Nucleic Acids Res. (2015)

Release Date

2015-09-02

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A type 1: CG
Histone H2B 1.1: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3.2

Toggle Identical (AE)

Histone H4

Histone H2A type 1

Toggle Identical (CG)

Histone H2B 1.1

Toggle Identical (DH)

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