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SMTL ID : 5byi.1

Human carbonic anhydrase II with an azobenzene inhibitor (1d)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: 4WA.3

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x HGB: 4-(HYDROXYMERCURY)BENZOIC ACID(Non-covalent)

HGB.2:

6 residues within 4Å:

Chain A: V.134, Q.135, Q.136, P.137, E.204, C.205

4 PLIP interactions:

3 interactions with chain A, 1 Ligand-Water interactions

Hydrophobic interactions: A:P.137
Metal complexes: A:Q.136, A:C.205, H₂O.9

1 x 4WA: 4-[(E)-(4-aminophenyl)diazenyl]benzenesulfonamide(Non-covalent)

4WA.3:

13 residues within 4Å:

Chain A: Q.92, H.94, H.96, H.119, V.121, F.130, V.142, L.197, T.198, T.199, P.201, W.208
Ligands: ZN.1

9 PLIP interactions:

9 interactions with chain A

Hydrophobic interactions: A:V.121, A:F.130, A:L.197, A:L.197, A:L.197, A:P.201
Hydrogen bonds: A:T.198, A:T.198
Water bridges: A:Q.92

2 x K: POTASSIUM ION(Non-covalent)

K.4:	1 residues within 4Å: Chain A: E.238 No protein-ligand interaction detected (PLIP)
K.5:	3 residues within 4Å: Chain A: N.62, G.63, H.64 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:N.62, A:H.64, H₂O.10, H₂O.12

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Runtsch, L.S. et al., Azobenzene-based inhibitors of human carbonic anhydrase II. Beilstein J Org Chem (2015)

Release Date

2015-08-05

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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