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SMTL ID : 5dog.1

Crystal structure of human carbonic anhydrase isozyme II with 2-(Benzylamino)-3,5,6-trifluoro-4-[(2-phenylethyl)thio]benzene- sulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: 5DT.4

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x BCN: BICINE(Non-covalent)

BCN.2:

4 residues within 4Å:

Chain A: K.148, K.212, E.213, P.214

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:K.148, A:K.148
Water bridges: A:Y.114, A:K.212
Salt bridges: A:K.212

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3:

6 residues within 4Å:

Chain A: L.163, D.164, K.167, K.224, K.227, L.228

2 PLIP interactions:

2 interactions with chain A

Hydrophobic interactions: A:K.224
Water bridges: A:D.164

1 x 5DT: 2-(benzylamino)-3,5,6-trifluoro-4-[(2-phenylethyl)sulfanyl]benzenesulfonamide(Non-covalent)

5DT.4:

19 residues within 4Å:

Chain A: W.5, Y.7, H.64, A.65, Q.92, H.94, H.96, H.119, V.121, F.130, L.140, V.142, L.197, T.198, T.199, P.201, W.208, N.243
Ligands: ZN.1

10 PLIP interactions:

10 interactions with chain A

Hydrophobic interactions: A:W.5, A:Y.7, A:H.64, A:A.65, A:T.199, A:P.201
Hydrogen bonds: A:T.198, A:T.198, A:T.199, A:T.199

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zubriene, A. et al., Intrinsic Thermodynamics and Structures of 2,4- and 3,4-Substituted Fluorinated Benzenesulfonamides Binding to Carbonic Anhydrases. ChemMedChem (2017)

Release Date

2016-09-28

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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