5ehv.1 | SWISS-MODEL Template Library

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SMTL ID : 5ehv.1

human carbonic anhydrase II in complex with ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.21 Å

Oligo State

monomer

Ligands

1 x 5ON: (~{E})-3-[3-[[3-(2-hydroxy-2-oxoethyl)phenyl]methoxy]phenyl]prop-2-enoic acid(Non-covalent)

5ON.1:

9 residues within 4Å:

Chain A: H.94, H.96, H.119, F.130, L.197, T.198, T.199, P.201
Ligands: ZN.2

9 PLIP interactions:

9 interactions with chain A

Hydrophobic interactions: A:F.130, A:L.197, A:L.197, A:P.201
Hydrogen bonds: A:T.198
Water bridges: A:T.198
Salt bridges: A:H.94, A:H.96, A:H.119

1 x ZN: ZINC ION(Non-covalent)

ZN.2:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: 5ON.1

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3:

4 residues within 4Å:

Chain A: K.112, Y.114, K.148, P.214

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:Y.114, A:K.148
Water bridges: A:K.112, A:K.112

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4:

5 residues within 4Å:

Chain A: Y.7, P.13, D.242, W.244, P.246

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:Y.7, A:W.244
Water bridges: A:Q.103, A:Q.103

1 x NA: SODIUM ION(Non-functional Binders)

NA.5:

3 residues within 4Å:

Chain A: D.110, K.111, K.112

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:D.110

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Woods, L.A. et al., Native State Mass Spectrometry, Surface Plasmon Resonance, and X-ray Crystallography Correlate Strongly as a Fragment Screening Combination. J.Med.Chem. (2016)

Release Date

2016-03-09

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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