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SMTL ID : 5fdc.1

Crystal structure of Human Carbonic Anhydrase II in complex with the anticonvulsant sulfamide JNJ-26990990 and its S,S-dioxide analog.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: 5WN.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x 5WN: 3-[(sulfamoylamino)methyl]-1-benzothiophene(Non-covalent)

5WN.2:

13 residues within 4Å:

Chain A: H.94, H.96, H.119, V.121, F.130, L.197, T.198, T.199, P.200, P.201, W.208
Ligands: ZN.1, GOL.3

4 PLIP interactions:

4 interactions with chain A

Hydrophobic interactions: A:F.130
Hydrogen bonds: A:T.198, A:T.198, A:T.199

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: 5WN.2

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:N.67, A:Q.92
Water bridges: A:T.199

1 x HGB: 4-(HYDROXYMERCURY)BENZOIC ACID(Non-covalent)

HGB.4:

6 residues within 4Å:

Chain A: V.134, Q.135, Q.136, P.137, E.204, C.205

5 PLIP interactions:

4 interactions with chain A, 1 Ligand-Water interactions

Hydrophobic interactions: A:P.137, A:P.137
Metal complexes: A:Q.136, A:C.205, H₂O.7

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Di Fiore, A. et al., The anticonvulsant sulfamide JNJ-26990990 and its S,S-dioxide analog strongly inhibit carbonic anhydrases: solution and X-ray crystallographic studies. Org.Biomol.Chem. (2016)

Release Date

2016-05-18

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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