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SMTL ID : 5flp.1

Native state mass spectrometry, surface plasmon resonance and X-ray crystallography correlate strongly as a fragment screening combination

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119
Ligands: 6J5.3

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:

5 residues within 4Å:

Chain A: Y.7, P.13, D.242, W.244, P.246

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

2 x 6J5: 5-[(2-chloranylphenoxy)methyl]-1H-1,2,3,4-tetrazole(Non-covalent)

6J5.3:	13 residues within 4Å: Chain A: Q.92, H.94, H.96, H.119, F.130, L.197, T.198, T.199, P.200, P.201, W.208 Ligands: ZN.1, 6J5.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.130, A:L.197 Hydrogen bonds: A:T.198
6J5.4:	6 residues within 4Å: Chain A: F.130, V.134, L.197, P.201, L.203 Ligands: 6J5.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.130, A:F.130

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Woods, L. et al., Native State Mass Spectrometry, Surface Plasmon Resonance and X-Ray Crystallography Correlate Strongly as a Fragment Screening Combination. J.Med.Chem. (2016)

Release Date

2016-03-02

Peptides

CARBONIC ANHYDRASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

CARBONIC ANHYDRASE 2

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