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SMTL ID : 5flr.1

Native state mass spectrometry, surface plasmon resonance and X-ray crystallography correlate strongly as a fragment screening combination

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: XCZ.6

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:	4 residues within 4Å: Chain A: Y.7, D.242, W.244, P.246 2 PLIP interactions: 2 interactions with chain A pi-Cation interactions: A:W.244, A:W.244
DMS.3:	7 residues within 4Å: Chain A: W.5, N.11, H.15, W.16, K.18, D.19, F.20 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.19

1 x NA: SODIUM ION(Non-functional Binders)

NA.4:

2 residues within 4Å:

Chain A: F.70, D.72

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:F.70
Water bridges: A:F.70

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: XCZ.6

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:Q.92
Water bridges: A:T.199

1 x XCZ: 1.7.6 4-methylpyrimidine-2-sulfonamide(Non-covalent)

XCZ.6:

12 residues within 4Å:

Chain A: Q.92, H.94, H.96, H.119, V.121, V.142, L.197, T.198, T.199, W.208
Ligands: ZN.1, GOL.5

4 PLIP interactions:

4 interactions with chain A

Hydrophobic interactions: A:L.197
Hydrogen bonds: A:T.198, A:T.198, A:T.199

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Woods, L. et al., Native State Mass Spectrometry, Surface Plasmon Resonance and X-Ray Crystallography Correlate Strongly as a Fragment Screening Combination. J.Med.Chem. (2016)

Release Date

2016-03-02

Peptides

CARBONIC ANHYDRASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

CARBONIC ANHYDRASE 2

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