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SMTL ID : 5flt.1

Native state mass spectrometry, surface plasmon resonance and X-ray crystallography correlate strongly as a fragment screening combination

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: VJJ.3

4 PLIP interactions:

3 interactions with chain A, 1 Ligand-Water interactions

Metal complexes: A:H.94, A:H.96, A:H.119, H₂O.6

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: VJJ.3

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:Q.92
Water bridges: A:T.199

1 x VJJ: 3-phenoxybenzoic acid(Non-covalent)

VJJ.3:

9 residues within 4Å:

Chain A: Q.92, H.94, F.130, L.197, T.198, T.199, P.201
Ligands: ZN.1, GOL.2

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:F.130, A:F.130, A:L.197
Hydrogen bonds: A:T.198, A:T.199
Salt bridges: A:H.94

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Woods, L. et al., Native State Mass Spectrometry, Surface Plasmon Resonance and X-Ray Crystallography Correlate Strongly as a Fragment Screening Combination. J.Med.Chem. (2016)

Release Date

2016-03-02

Peptides

HUMAN CARBONIC ANHYDRASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

HUMAN CARBONIC ANHYDRASE 2

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