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SMTL ID : 5fnh.1

Native state mass spectrometry, surface plasmon resonance and X-ray crystallography correlate strongly as a fragment screening combination

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: YIP.5

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:	3 residues within 4Å: Chain A: Q.157, K.158, D.161 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.157 Water bridges: A:P.154, A:P.154, A:Q.157
GOL.3:	3 residues within 4Å: Chain A: D.110, K.111, K.112 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.113

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:

4 residues within 4Å:

Chain A: Y.7, D.242, W.244, P.246

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

2 x YIP: 5-[(3-chloranylphenoxy)methyl]-1,2,4-triaza-3-azanidacyclopenta-1,4-diene(Non-covalent)

YIP.5:	10 residues within 4Å: Chain A: H.94, H.96, H.119, F.130, L.197, T.198, T.199, P.201, W.208 Ligands: ZN.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.130 Hydrogen bonds: A:T.198, A:T.199
YIP.6:	4 residues within 4Å: Chain A: D.52, D.179, R.181, G.182 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.181 Hydrogen bonds: A:R.181, A:R.181

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Woods, L. et al., Native State Mass Spectrometry, Surface Plasmon Resonance and X-Ray Crystallography Correlate Strongly as a Fragment Screening Combination. J.Med.Chem. (2016)

Release Date

2016-03-02

Peptides

CARBONIC ANHYDRASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

CARBONIC ANHYDRASE 2

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