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SMTL ID : 5fnk.1

Native state mass spectrometry, surface plasmon resonance and X-ray crystallography correlate strongly as a fragment screening combination

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: 5OO.6

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:

5 residues within 4Å:

Chain A: Y.7, P.13, D.242, W.244, P.246

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3:

4 residues within 4Å:

Chain A: P.21, I.22, K.24, G.25

1 PLIP interactions:

1 interactions with chain A

Water bridges: A:P.21

2 x NA: SODIUM ION(Non-functional Binders)

NA.4:	3 residues within 4Å: Chain A: D.34, H.36, D.110 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.110, A:D.110
NA.5:	5 residues within 4Å: Chain A: D.71, D.72, A.77, R.89, L.90 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.77, A:L.90, A:L.90

1 x 5OO: (~{E})-3-(2,4-dichlorophenyl)prop-2-enoic acid(Non-covalent)

5OO.6:

11 residues within 4Å:

Chain A: H.94, H.96, H.119, V.121, F.130, L.197, T.198, T.199, P.200, P.201
Ligands: ZN.1

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:F.130, A:L.197
Hydrogen bonds: A:T.198
Salt bridges: A:H.94, A:H.96, A:H.119

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Woods, L. et al., Native State Mass Spectrometry, Surface Plasmon Resonance and X-Ray Crystallography Correlate Strongly as a Fragment Screening Combination. J.Med.Chem. (2016)

Release Date

2016-03-02

Peptides

CARBONIC ANHYDRASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

CARBONIC ANHYDRASE 2

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