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SMTL ID : 5fnl.1

Native state mass spectrometry, surface plasmon resonance and X-ray crystallography correlate strongly as a fragment screening combination

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: 5ON.4

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:

4 residues within 4Å:

Chain A: Y.7, D.242, W.244, P.246

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:

4 residues within 4Å:

Chain A: P.21, I.22, K.24, G.25

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:K.24
Water bridges: A:E.26, A:E.204

1 x 5ON: (~{E})-3-[3-[[3-(2-hydroxy-2-oxoethyl)phenyl]methoxy]phenyl]prop-2-enoic acid(Non-covalent)

5ON.4:

14 residues within 4Å:

Chain A: Q.92, H.94, H.96, H.119, F.130, G.131, V.134, Q.135, L.197, T.198, T.199, P.201, L.203
Ligands: ZN.1

13 PLIP interactions:

13 interactions with chain A

Hydrophobic interactions: A:F.130, A:V.134, A:L.197, A:L.197, A:P.201, A:L.203
Hydrogen bonds: A:Q.135, A:T.198
Water bridges: A:T.198, A:T.199
Salt bridges: A:H.94, A:H.96, A:H.119

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Woods, L.A. et al., Native State Mass Spectrometry, Surface Plasmon Resonance, and X-Ray Crystallography Correlate Strongly as a Fragment Screening Combination. J.Med.Chem. (2016)

Release Date

2016-09-28

Peptides

CARBONIC ANHYDRASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

CARBONIC ANHYDRASE 2

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