SMTL ID : 5khy.1

Crystal structure of oxime-linked K6 diubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

hetero-1-1-mer

Ligands

10 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: H.68 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.68 ZN.2: 3 residues within 4Å: Chain A: E.18, N.25, K.29 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.18, A:E.18 ZN.3: 2 residues within 4Å: Chain A: M.1, E.16 No protein-ligand interaction detected (PLIP) ZN.4: 1 residues within 4Å: Chain A: D.58 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.58 ZN.5: 1 residues within 4Å: Chain A: D.52 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.52 ZN.6: 1 residues within 4Å: Chain A: D.39 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.39 ZN.7: 1 residues within 4Å: Chain B: D.32 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.32, B:D.32 ZN.8: 1 residues within 4Å: Chain B: E.18 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.18 ZN.9: 2 residues within 4Å: Chain B: G.53, D.58 No protein-ligand interaction detected (PLIP) ZN.10: 2 residues within 4Å: Chain B: E.24, K.27 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.24

1 x ETA: ETHANOLAMINE(Covalent)

ETA.11: 3 residues within 4Å: Chain A: X.6 Chain B: R.74, G.75 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stanley, M. et al., Genetically Directed Production of Recombinant, Isosteric and Nonhydrolysable Ubiquitin Conjugates. Chembiochem (2016)

Release Date

2016-09-14

Peptides

Polyubiquitin-B: A
Polyubiquitin-B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Polyubiquitin-B

Polyubiquitin-B

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