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SMTL ID : 5llc.1

Crystal structure of human carbonic anhydrase isozyme II with 3-(Methylamino)-2,5,6-trifluoro-4-[(2-phenylethyl)sulfonyl]benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: V26.8

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:	5 residues within 4Å: Chain A: Y.7, P.13, D.242, W.244, P.246 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:D.242 pi-Cation interactions: A:W.244, A:W.244
DMS.3:	3 residues within 4Å: Chain A: I.91, F.130 Ligands: V26.8 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.67, A:N.67

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4:	2 residues within 4Å: Chain A: K.148, P.214 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.148, A:K.148
EDO.5:	6 residues within 4Å: Chain A: L.163, D.164, K.167, K.224, K.227, L.228 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.227 Water bridges: A:V.160, A:D.164
EDO.6:	3 residues within 4Å: Chain A: H.17, K.18, P.21 No protein-ligand interaction detected (PLIP)
EDO.7:	1 residues within 4Å: Chain A: P.246 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.247

1 x V26: 2,3,6-tris(fluoranyl)-5-(methylamino)-4-(2-phenylethylsulfonyl)benzenesulfonamide(Non-covalent)

V26.8:

17 residues within 4Å:

Chain A: N.62, H.64, N.67, Q.92, H.94, H.96, H.119, V.121, F.130, L.197, T.198, T.199, P.200, P.201, W.208
Ligands: ZN.1, DMS.3

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:T.199
Hydrogen bonds: A:T.198, A:T.198
pi-Stacking: A:H.64
Halogen bonds: A:T.199, A:P.200

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Smirnov, A. et al., Crystal structure correlations with the intrinsic thermodynamics of human carbonic anhydrase inhibitor binding. PeerJ (2018)

Release Date

2017-08-16

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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