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SMTL ID : 5llh.1

Crystal structure of human carbonic anhydrase isozyme II with 4-(1,3-Benzothiazol-2-ylthio)-2,3,5,6-tetrafluorobenzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119
Ligands: V49.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x V49: 4-(1,3-benzothiazol-2-ylsulfanyl)-2,3,5,6-tetrakis(fluoranyl)benzenesulfonamide(Non-covalent)

V49.2:

17 residues within 4Å:

Chain A: Q.92, H.94, H.96, E.106, H.119, V.121, F.130, V.134, V.142, S.196, L.197, T.198, T.199, P.201, W.208
Ligands: ZN.1, DMS.3

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:V.134, A:L.197, A:P.201
Hydrogen bonds: A:E.106, A:T.198
pi-Stacking: A:F.130, A:F.130
pi-Cation interactions: A:H.94

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:	5 residues within 4Å: Chain A: N.67, I.91, Q.92, F.130 Ligands: V49.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.92 Water bridges: A:N.67 pi-Cation interactions: A:F.130
DMS.4:	4 residues within 4Å: Chain A: Y.7, D.242, W.244, P.246 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:D.242 pi-Cation interactions: A:W.244, A:W.244

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.5:

5 residues within 4Å:

Chain A: L.163, D.164, K.167, K.224, K.227

No protein-ligand interaction detected (PLIP)

1 x BCN: BICINE(Non-covalent)

BCN.6:

4 residues within 4Å:

Chain A: K.148, K.212, E.213, P.214

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:K.212
Water bridges: A:Y.114
Salt bridges: A:K.148

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Smirnov, A. et al., Crystal structure correlations with the intrinsic thermodynamics of human carbonic anhydrase inhibitor binding. PeerJ (2018)

Release Date

2017-08-16

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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