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SMTL ID : 5nea.1

Crystal structure of human carbonic anhydrase II in complex with the inhibitor 4-(2-methyl-1,3-oxazol-5-yl)benzene-1-sulfonammide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: 8V8.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

2 x 8V8: 4-(2-methyl-1,3-oxazol-5-yl)benzenesulfonamide(Non-covalent)

8V8.2:	14 residues within 4Å: Chain A: Q.92, H.94, H.96, H.119, V.121, F.130, V.142, L.197, T.198, T.199, P.201, W.208 Ligands: ZN.1, GOL.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.121, A:L.197, A:L.197 Hydrogen bonds: A:T.198, A:T.198 Water bridges: A:Q.92
8V8.3:	8 residues within 4Å: Chain A: H.4, W.5, H.10, N.11, H.15, W.16, D.19, F.20 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.4, A:N.11 Hydrogen bonds: A:D.19, A:D.19, A:D.19 Water bridges: A:W.5

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: 8V8.2

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:N.67, A:Q.92
Water bridges: A:T.199

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5:

4 residues within 4Å:

Chain A: Y.7, D.242, W.244, P.246

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:Y.7

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ferraroni, M. et al., 1,3-Oxazole-based selective picomolar inhibitors of cytosolic human carbonic anhydrase II alleviate ocular hypertension in rabbits: Potency is supported by X-ray crystallography of two leads. Bioorg. Med. Chem. (2017)

Release Date

2017-12-06

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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