- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-3-3-1-2-2-2-2-mer
- Ligands
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)
ADP.1: 18 residues within 4Å:- Chain D: A.26, H.27, H.29, G.47, F.48, V.49, G.80, P.81, S.82, T.83, G.84, K.85, T.86, A.87, Y.375, I.383, R.413
- Chain I: E.314
16 PLIP interactions:16 interactions with chain D- Hydrogen bonds: D:H.27, D:V.49, D:G.80, D:S.82, D:T.83, D:G.84, D:K.85, D:T.86, D:T.86, D:T.86, D:A.87, D:Y.375, D:Y.375
- Salt bridges: D:K.85, D:R.413, D:R.413
ADP.2: 18 residues within 4Å:- Chain E: A.22, H.23, H.25, G.43, M.44, V.45, P.76, P.77, S.78, T.79, G.80, K.81, T.82, A.83, Y.359, I.367, L.396, R.397
14 PLIP interactions:14 interactions with chain E- Hydrogen bonds: E:A.22, E:V.45, E:S.78, E:T.79, E:G.80, E:K.81, E:T.82, E:T.82, E:A.83, E:Y.359, E:Y.359
- Salt bridges: E:K.81, E:R.397, E:R.397
ADP.3: 18 residues within 4Å:- Chain E: E.314, R.350
- Chain F: A.26, H.27, H.29, G.47, F.48, V.49, G.80, S.82, T.83, G.84, K.85, T.86, A.87, Y.375, I.383, R.413
15 PLIP interactions:14 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: F:A.26, F:V.49, F:S.82, F:T.83, F:G.84, F:K.85, F:T.86, F:T.86, F:A.87, F:Y.375, F:Y.375, E:R.350
- Salt bridges: F:K.85, F:R.413, F:R.413
ADP.4: 18 residues within 4Å:- Chain F: R.366
- Chain G: A.22, H.23, H.25, I.26, G.43, M.44, V.45, S.78, T.79, G.80, K.81, T.82, A.83, Y.359, I.367, L.396, R.397
17 PLIP interactions:16 interactions with chain G, 1 interactions with chain F- Hydrogen bonds: G:A.22, G:V.45, G:T.79, G:T.79, G:T.79, G:G.80, G:K.81, G:T.82, G:T.82, G:T.82, G:A.83, G:Y.359, G:Y.359, F:R.366
- Salt bridges: G:H.23, G:K.81, G:R.397
ADP.5: 17 residues within 4Å:- Chain G: E.314
- Chain H: A.26, H.27, H.29, G.47, F.48, V.49, P.81, S.82, T.83, G.84, K.85, T.86, A.87, Y.375, I.383, R.413
14 PLIP interactions:14 interactions with chain H- Hydrogen bonds: H:A.26, H:V.49, H:S.82, H:T.83, H:G.84, H:K.85, H:T.86, H:T.86, H:A.87, H:Y.375, H:Y.375
- Salt bridges: H:K.85, H:R.413, H:R.413
ADP.6: 17 residues within 4Å:- Chain I: A.22, H.23, H.25, G.43, M.44, V.45, P.77, S.78, T.79, G.80, K.81, T.82, A.83, Y.359, I.367, L.396, R.397
15 PLIP interactions:15 interactions with chain I- Hydrogen bonds: I:A.22, I:V.45, I:S.78, I:T.79, I:G.80, I:K.81, I:T.82, I:T.82, I:A.83, I:Y.359, I:Y.359
- Salt bridges: I:H.23, I:K.81, I:R.397, I:R.397
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kaur, U. et al., Autoinhibition imposed by a large conformational switch of INO80 regulates nucleosome positioning. Science (2025)
- Release Date
- 2025-07-16
- Peptides
- Chromatin-remodeling ATPase INO80: A
Actin-related protein 5: B
Chromatin-remodeling complex subunit IES6: C
RuvB-like protein 1: DFH
RuvB-like protein 2: EGI
Ino eighty subunit 2: J
Histone H3: KO
Histone H4: LP
Histone H2A: MQ
Histone H2B: NR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
QB
RC
SD
TF
VH
XE
UG
WI
YJ
ZK
AO
EL
BP
FM
CQ
GN
DR
H
SMTL ID : 9c9s.1
S.c INO80 in complex with S.c 0/40 nucleosome, Class 1
Chromatin-remodeling ATPase INO80
Actin-related protein 5
Chromatin-remodeling complex subunit IES6
RuvB-like protein 1
RuvB-like protein 2
Ino eighty subunit 2
Histone H3
Toggle Identical (KO)Histone H4
Toggle Identical (LP)Histone H2A
Histone H2B
Toggle Identical (NR)Related Entries With Identical Sequence
1eqz.1 | 1f66.1 | 1hq3.1 | 1tzy.1 | 1u35.1 | 2aro.1 | 2cv5.1 | 2f8n.1 | 3nqu.1 | 3r45.1 | 4hga.1 | 4kgc.1 | 4kud.1 | 4ld9.1 | 4wnn.1 | 4wnn.2 | 4wnn.3 | 4wnn.4 | 4z2m.1 | 4zux.1 | 4zux.2 | 5c3i.1 | 5c3i.2 | 5c3i.3 | 5c3i.4 | 5c3i.5 | 5c3i.6 | 5e5a.1 | 5kgf.1 | 5o9g.1 more...less...5omx.1 | 5ong.1 | 5onw.1 | 5x0x.1 | 5xf3.1 | 5xf4.1 | 5xf5.1 | 5zba.1 | 5zbb.1 | 6buz.1 | 6e0c.1 | 6e0p.1 | 6ftx.1 | 6g0l.1 | 6gej.1 | 6gen.1 | 6hts.1 | 6i84.1 | 6j99.1 | 6kw3.1 | 6kw4.1 | 6kw5.1 | 6l9z.1 | 6la2.1 | 6la8.1 | 6la9.1 | 6lab.1 | 6ler.1 | 6ler.2 | 6ltj.1 | 6m3v.1 | 6m44.1 | 6m4d.1 | 6m4g.1 | 6m4h.1 | 6ne3.1 | 6nzo.1 | 6o1d.1 | 6o22.1 | 6o96.1 | 6om3.1 | 6om3.2 | 6pa7.1 | 6pwv.1 | 6pww.1 | 6pwx.1 | 6px1.1 | 6px3.1 | 6r0c.1 | 6r8y.1 | 6rny.1 | 6ryr.1 | 6ryu.1 | 6se0.1 | 6se6.1 | 6see.1 | 6sef.1 | 6seg.1 | 6t79.1 | 6t7a.1 | 6t7b.1 | 6t7c.1 | 6t7d.1 | 6tem.1 | 6upk.1 | 6upl.1 | 6v92.1 | 6vz4.1 | 6w5i.1 | 6w5m.1 | 6w5n.1 | 6wkr.1 | 6y5d.1 | 6zhx.1 | 6zhy.1 | 7dbp.1 | 7jo9.1 | 7joa.1 | 7k5x.1 | 7k5y.1 | 7k60.1 | 7k61.1 | 7k63.1 | 7k78.1 | 7k7g.1 | 7kbd.1 | 7kbe.1 | 7kbf.1 | 7m1x.1 | 7mbm.1 | 7mbn.1 | 7nkx.1 | 7nky.1 | 7nl0.1 | 7otq.1 | 7pet.1 | 7peu.1 | 7pev.1 | 7pew.1 | 7pex.1 | 7pey.1 | 7pez.1 | 7pf0.1 | 7pf2.1 | 7pf3.1 | 7pf4.1 | 7pf5.1 | 7pf6.1 | 7pfa.1 | 7pfc.1 | 7pfd.1 | 7pfe.1 | 7pff.1 | 7pft.1 | 7pfu.1 | 7pfv.1 | 7pfw.1 | 7pfx.1 | 7pii.1 | 7r5r.1 | 7ssa.1 | 7tan.1 | 7u0g.1 | 7u0i.1 | 7u0j.1 | 7u46.1 | 7u47.1 | 7u4d.1 | 7ud5.1 | 7unc.1 | 7und.1 | 7unk.1 | 7ux9.1 | 7v90.1 | 7v96.1 | 7v9c.1 | 7v9j.1 | 7v9k.1 | 7v9s.1 | 7va4.1 | 7vcq.1 | 7vcq.2 | 7vcq.3 | 7vdt.1 | 7vdv.1 | 7vvu.1 | 7vvz.1 | 7x3t.1 | 7x3v.1 | 7x3w.1 | 7x3x.1 | 7xfc.1 | 7xfh.1 | 7xfi.1 | 7xfj.1 | 7xfl.1 | 7xfm.1 | 7xfn.1 | 7xnp.1 | 7y5u.1 | 7y5v.1 | 7y5w.1 | 7y60.1 | 7y61.1 | 7ywx.1 | 7yyh.1 | 7z0o.1 | 7zi4.1 | 8a3y.1 | 8aag.1 | 8b0a.1 | 8bvw.1 | 8byq.1 | 8bz1.1 | 8dk5.1 | 8du4.1 | 8ett.1 | 8etv.1 | 8eu2.1 | 8eu9.1 | 8eue.1 | 8euf.1 | 8euj.1 | 8evg.1 | 8evh.1 | 8evi.1 | 8evj.1 | 8g6g.1 | 8g6h.1 | 8g6q.1 | 8g6s.1 | 8ghm.1 | 8ghn.1 | 8gpn.1 | 8h1t.1 | 8iqf.1 | 8iqg.1 | 8j6s.1 | 8j6t.1 | 8jh2.1 | 8jh3.1 | 8jh4.1 | 8of4.1 | 8off.1 | 8ow0.1 | 8ow1.1 | 8pki.1 | 8pkj.1 | 8qku.1 | 8qkv.1 | 8qyv.1 | 8qz0.1 | 8rbx.1 | 8rup.1 | 8ruq.1 | 8sps.1 | 8spu.1 | 8svf.1 | 8syp.1 | 8thu.1 | 8tof.1 | 8u5h.1 | 8uw1.1 | 8v25.1 | 8v26.1 | 8v27.1 | 8v28.1 | 8vfx.1 | 8vfy.1 | 8vfz.1 | 8vg0.1 | 8vg1.1 | 8vg2.1 | 8vmj.1 | 8vmn.1 | 8vob.1 | 8w9d.1 | 8w9e.1 | 8w9f.1 | 8x15.1 | 8x19.1 | 8x1c.1 | 8x2x.1 | 8x2y.1 | 8x2z.1 | 8x30.1 | 8x31.1 | 8x32.1 | 8xgc.1 | 8xjv.48 | 8xjv.49 | 8xjv.50 | 8xjv.51 | 8xjv.52 | 8xjv.53 | 8xjv.54 | 8xjv.55 | 8xjv.56 | 8xjv.57 | 8xjv.58 | 8xjv.59 | 8xjv.60 | 8xjv.61 | 8xjv.62 | 8xjv.63 | 8xjv.64 | 8xjv.65 | 8xjv.66 | 8xjv.67 | 8xjv.68 | 8xjv.69 | 8xjv.70 | 8xjv.71 | 8yjf.1 | 8yjm.1 | 8yti.1 | 8z50.1 | 9b1d.1 | 9b1e.1 | 9b2s.1 | 9b2t.1 | 9b3p.1 | 9c9g.1 | 9c9t.1 | 9c9x.1 | 9c9z.1 | 9can.1 | 9cat.1 | 9cau.1 | 9cb7.1 | 9ccd.1 | 9dby.1 | 9dde.1 | 9dg3.1 | 9dgg.1 | 9e1l.1 | 9e1m.1 | 9e1n.1 | 9e1o.1 | 9e1p.1 | 9e1q.1 | 9e1r.1 | 9e1u.1 | 9e1v.1 | 9e1w.1 | 9e1x.1 | 9e1y.1 | 9egx.1 | 9egy.1 | 9egz.1 | 9eh0.1 | 9eh2.1 | 9fbw.1 | 9fgq.1 | 9fh9.1 | 9gd0.1 | 9gd1.1 | 9gd2.1 | 9gd3.1 | 9gmk.1 | 9gmr.1 | 9ii7.1 | 9j0n.1 | 9j0o.1 | 9j0p.1 | 9jao.1 | 9nh8.1