SMTL ID : 5qby.2 (1 other biounit)

Crystal structure of human Cathepsin-S with bound ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x N2A: N-[2-chloro-5-(1-{3-[4-(6-chloro-3-methyl-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)piperidin-1-yl]propyl}-6-oxo-1,6-dihydropyrimidin-5-yl)benzyl]-4-fluorobenzamide(Non-covalent)

N2A.1: 16 residues within 4Å: Chain A: K.61, G.63, N.64, K.65, N.68, G.69, G.70, F.71, M.72, T.73, T.74, E.116, V.163, H.165, G.166, F.212 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.71, A:F.71, A:F.71, A:F.71, A:T.74, A:V.163 Hydrogen bonds: A:G.70 Water bridges: A:G.70 Salt bridges: A:E.116 pi-Stacking: A:F.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ameriks, M.K. et al., Diazinones as P2 replacements for pyrazole-based cathepsin S inhibitors. Bioorg.Med.Chem.Lett. (2010)

Release Date

2017-12-20

Peptides

Cathepsin S: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cathepsin S

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