SMTL ID : 5qcd.1

Crystal structure of human Cathepsin-S with bound ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x BHJ: {(3S)-7-[(2-chloro-5-{5-(methylsulfonyl)-1-[3-(morpholin-4-yl)propyl]-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridin-3-yl}phenyl)ethynyl]-1,2,3,4-tetrahydroisoquinolin-3-yl}(piperidin-1-yl)methanone(Non-covalent)

BHJ.1: 17 residues within 4Å: Chain A: G.24, S.26, C.67, N.68, G.69, G.70, F.71, M.72, T.74, G.138, N.162, V.163, N.164, H.165, G.166, F.212 Ligands: SO4.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.71, A:V.163, A:F.212, A:F.212 Hydrogen bonds: A:N.68, A:V.163 pi-Stacking: A:F.212 pi-Cation interactions: A:F.71

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: Q.20, G.24, A.25, S.26, N.164, H.165, W.187 Ligands: BHJ.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.20, A:S.26, A:S.26, A:N.164 Salt bridges: A:H.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bembenek, S.D. et al., Crystal structure of human Cathepsin-S with bound ligand. To be published

Release Date

2017-12-20

Peptides

Cathepsin S: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cathepsin S

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