SMTL ID : 5qc4.2 (1 other biounit)

Crystal structure of human Cathepsin-S with bound ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x BC7: 2-[5-[5-ethanoyl-1-[(2~{R})-2-oxidanyl-3-[4-(2-oxidanylpropan-2-yl)piperidin-1-yl]propyl]-6,7-dihydro-4~{H}-pyrazolo[4,3-c]pyridin-3-yl]-2-(trifluoromethyl)phenyl]sulfanyl-1-pyrrolidin-1-yl-ethanone(Non-covalent)

BC7.1: 17 residues within 4Å: Chain A: W.27, Y.62, G.63, K.65, N.68, G.69, G.70, F.71, M.72, V.137, G.138, N.162, V.163, N.164, H.165, G.166, F.212 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.65, A:F.71, A:F.71, A:F.71, A:V.163, A:F.212, A:F.212 Hydrogen bonds: A:Y.62, A:V.163 Water bridges: A:G.70 pi-Stacking: A:F.212 Halogen bonds: A:V.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wiener, D.K. et al., Thioether acetamides as P3 binding elements for tetrahydropyrido-pyrazole cathepsin S inhibitors. Bioorg.Med.Chem.Lett. (2010)

Release Date

2017-12-20

Peptides

Cathepsin S: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cathepsin S

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