SMTL ID : 5qc3.2 (1 other biounit)

Crystal structure of human Cathepsin-S with bound ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x B9Y: 1-{3-[3-{[2-(4-fluoropiperidin-1-yl)ethyl]sulfanyl}-4-(trifluoromethyl)phenyl]-1-[(2S)-2-hydroxy-3-(piperidin-1-yl)propyl]-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridin-5-yl}-2-hydroxyethan-1-one(Non-covalent)

B9Y.1: 19 residues within 4Å: Chain A: W.27, G.63, K.65, N.68, G.69, G.70, F.71, M.72, T.74, Y.119, V.137, G.138, Q.161, N.162, V.163, N.164, H.165, G.166, F.212 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.71, A:F.71, A:F.71, A:T.74, A:V.163, A:F.212, A:F.212 Hydrogen bonds: A:Y.119, A:V.163 Water bridges: A:N.162 pi-Stacking: A:F.212 pi-Cation interactions: A:F.71 Halogen bonds: A:V.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bembenek, S.D. et al., Crystal structure of human Cathepsin-S with bound ligand. To be published

Release Date

2017-12-20

Peptides

Cathepsin S: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cathepsin S

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