SMTL ID : 5qc0.1 (1 other biounit)

Crystal structure of human Cathepsin-S with bound ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x BQJ: 2-(dimethylamino)-1-[4-(2-oxo-2-{3-[3-{[2-(piperidin-1-yl)ethyl]sulfanyl}-4-(trifluoromethyl)phenyl]-1-propyl-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridin-5-yl}ethyl)piperidin-1-yl]ethan-1-one(Non-covalent)

BQJ.1: 16 residues within 4Å: Chain A: W.27, K.61, G.63, K.65, G.70, F.71, M.72, T.73, E.116, V.137, G.138, V.163, N.164, H.165, G.166, F.212 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:K.65, A:F.71, A:V.163, A:F.212, A:F.212, A:F.212 Water bridges: A:T.73 pi-Stacking: A:F.71, A:F.212 Halogen bonds: A:V.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bembenek, S.D. et al., Crystal structure of human Cathepsin-S with bound ligand. To be published

Release Date

2017-12-20

Peptides

Cathepsin S: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cathepsin S

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