SMTL ID : 5qc7.2 (1 other biounit)

Crystal structure of human Cathepsin-S with bound ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x BQS: 2-[1-(cyclohexylmethyl)piperidin-4-yl]-1-{3-[3-{[2-(piperidin-1-yl)ethyl]sulfanyl}-4-(trifluoromethyl)phenyl]-1-propyl-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridin-5-yl}ethan-1-one(Non-covalent)

BQS.1: 18 residues within 4Å: Chain A: W.27, K.61, Y.62, G.63, K.65, G.70, F.71, M.72, T.73, E.116, V.137, G.138, V.163, N.164, H.165, G.166, F.212 Ligands: DMS.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:K.65, A:F.71, A:F.71, A:V.163, A:F.212, A:F.212 Water bridges: A:T.73, A:E.116 pi-Stacking: A:F.71, A:F.212 Halogen bonds: A:V.137

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 7 residues within 4Å: Chain A: G.24, S.26, W.27, G.69, G.70, N.164 Ligands: BQS.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.70

2 x EOH: ETHANOL(Non-functional Binders)

EOH.3: 6 residues within 4Å: Chain A: D.86, S.90, Y.91, Q.101, D.103, Y.106 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.103, A:Y.106 Water bridges: A:Q.101 EOH.4: 4 residues within 4Å: Chain A: V.6, D.7, W.8, K.11 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.6, A:W.8 Hydrogen bonds: A:D.7, A:D.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bembenek, S.D. et al., Crystal structure of human Cathepsin-S with bound ligand. To be published

Release Date

2017-12-20

Peptides

Cathepsin S: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cathepsin S

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