SMTL ID : 5qc6.1 (1 other biounit)

Crystal structure of human Cathepsin-S with bound ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x BCJ: (4~{S})-1-[1-[(2~{S})-3-[3-[3-[2-(4-methylpiperidin-1-yl)ethylsulfanyl]-4-(trifluoromethyl)phenyl]-5-methylsulfonyl-6,7-dihydro-4~{H}-pyrazolo[4,3-c]pyridin-1-yl]-2-oxidanyl-propyl]piperidin-4-yl]-4-oxidanyl-pyrrolidin-2-one(Non-covalent)

BCJ.1: 16 residues within 4Å: Chain A: W.27, G.63, K.65, N.68, G.70, F.71, M.72, T.74, V.137, G.138, N.162, V.163, N.164, H.165, G.166, F.212 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.65, A:F.71, A:F.71, A:T.74, A:V.163, A:F.212, A:F.212 Hydrogen bonds: A:V.163 Water bridges: A:G.70, A:T.73 pi-Stacking: A:F.212 Halogen bonds: A:V.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bembenek, S.D. et al., Crystal structure of human Cathepsin-S with bound ligand. To be published

Release Date

2017-12-20

Peptides

Cathepsin S: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cathepsin S

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