SMTL ID : 5qcf.2 (1 other biounit)

Crystal structure of human Cathepsin-S with bound ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x BJD: N-benzyl-1-{2-chloro-5-[(2-chloro-5-{5-(methylsulfonyl)-1-[3-(morpholin-4-yl)propyl]-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridin-3-yl}phenyl)ethynyl]phenyl}methanamine(Non-covalent)

BJD.1: 14 residues within 4Å: Chain A: F.71, M.72, T.74, A.141, R.142, F.147, N.162, V.163, N.164, H.165, G.166, W.187, F.212 Ligands: SO4.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.71, A:F.71, A:A.141, A:F.147, A:V.163, A:N.164, A:W.187, A:F.212 Hydrogen bonds: A:V.163 Water bridges: A:N.162 pi-Stacking: A:F.212 pi-Cation interactions: A:F.71

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: Q.20, G.24, A.25, S.26, N.164, H.165 Ligands: BJD.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.20, A:S.26, A:S.26, A:N.164 Water bridges: A:W.27, A:W.27 Salt bridges: A:H.165

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: L.39, T.43, A.108, A.109, T.110, I.218 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.110, A:T.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bembenek, S.D. et al., Crystal structure of human Cathepsin-S with bound ligand. To be published

Release Date

2017-12-20

Peptides

Cathepsin S: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cathepsin S

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